Tools we Developed or Co-Developed

  •            Actively Maintained

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    BHIT

    SNP interaction detection

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    MUFOLD

    Protein tertiary structure prediction

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    MusiteDeep

    A deep-learning framework for protein post-translational modification site prediction.

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    Primegens

    Primer design for microarray

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    P3DB

    Plant protein phosphorylation database

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    SoyKB

    Soybean knowledge base

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    IEW

    Integrated Edge Weights

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    KBCommons

    Knowledge Base Commons

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    IMPRes

    Integrative MultiOmics Pathway Resolution

  •                         Others

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    ComPhy

    Genome Composite Distance Phylogeny for whole-genome phylogeney inferences

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    CodonO

    Codon usage bias measurement

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    DomainParser

    Protein structure domain partition

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    EXCAVATOR

    Gene expression data analysis

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    GeneFAS

    Gene function prediction

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    HPbase

    A comprehensive resource for Helicobactor Pylori

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    Mosaic

    Partition and display gene graph based on GO terms

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    MUPRED

    Protein secondary structure prediction

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    NOA

    Network ontology analysis

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    Rnall

    RNA Local secondary structure prediction

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    SoyMetDB

    The soybean metabolome database

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    SpotLink

    Proteomics tool for organization and visualization

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    GRNInfer

    A gene regulatory network inference tool from multiple microarray datasets